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ICD-10
HPO
Compare GWAS
Super Class
Noninflammatory disorders of ovary, Fallopian tube and broad ligament
Sub Class
Corpus luteum cyst
N83.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
573
459632
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr20:58316564
rs6128676
PHACTR3
C>T
107
51110
30.1
4.095e-08
1.735
chr2:27047301
rs7565137
-
C>T
56
21900
29.59
5.325e-08
2.073
chr1:6559725
rs74049595
PLEKHG5
C>T
34
10900
29.59
5.327e-08
2.497
chr6:117833868
rs9767548
AL132671.2
A>G
39
14020
25.73
3.923e-07
2.236
chr3:66525963
rs3845905
LRIG1
C>T
90
42225
25.7
3.988e-07
1.731
chr10:48445554
rs1993488
-
A>G
66
28554
25.55
4.309e-07
1.877
chr21:41570284
rs55748941
DSCAM
G>A
55
22586
24.93
5.953e-07
1.967
chr7:156917199
rs17837717
-
A>G
63
27242
24.19
8.728e-07
1.871
chr9:88476257
rs17430361
-
T>C
45
17394
24.08
9.24e-07
2.075
chr7:70443501
rs4717572
-
T>C
631
428229
23.71
1.122e-06
1.318
chr13:31074486
rs7326905
HMGB1
G>A
31
10578
23.08
1.552e-06
2.338
chr2:131768531
rs6430514
ARHGEF4
G>T
80
37532
22.82
1.775e-06
1.726
chr8:116631902
rs7823278
TRPS1
C>A
32
11327
21.82
2.99e-06
2.259
chr16:57955692
rs9932825
CNGB1
C>G
49
20284
21.44
3.658e-06
1.942
chr3:66513947
rs4856941
LRIG1
T>G
95
47269
21.26
4.012e-06
1.629
chr5:147666044
rs7707813
-
T>C
46
18717
21.07
4.417e-06
1.969
chr2:104690142
rs112534266
-
C>A
35
12993
21.06
4.462e-06
2.157
chr16:57955613
rs9922949
CNGB1
A>G
49
20398
20.91
4.809e-06
1.926
chr7:18835725
rs10234468
HDAC9
T>C
126
67397
20.89
4.867e-06
1.533
chr16:77595335
rs283004
-
G>A
104
53130
20.88
4.891e-06
1.591
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000048
Bifid scrotum
7/20
HP: 0000051
Perineal hypospadias
4/20
HP: 0000137
Abnormality of the ovary
2/20
HP: 0002585
Abnormality of the peritoneum
1/20
HP: 0011854
Hemoperitoneum
1/20
HP: 0012885
Fallopian tube duplication
1/20
HP: 0031065
Abnormal ovarian morphology
2/20
HP: 0031086
Ectopic ovary
7/20
HP: 0040242
Muscle hemorrhage
3/20
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
0/20
HP: 0000032
Abnormality of male external genitalia
0/20
HP: 0000036
Abnormality of the penis
0/20
HP: 0000045
Abnormality of the scrotum
0/20
HP: 0000047
Hypospadias
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000795
Abnormality of the urethra
0/20
HP: 0000811
Abnormal external genitalia
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0001194
Abnormalities of placenta or umbilical cord
0/20
HP: 0001197
Abnormality of prenatal development or birth
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0001892
Abnormal bleeding
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0003011
Abnormality of the musculature
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0010461
Abnormality of the male genitalia
0/20
HP: 0010936
Abnormality of the lower urinary tract
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0011027
Abnormal fallopian tube morphology
0/20
HP: 0011028
Abnormality of blood circulation
0/20
HP: 0011029
Internal hemorrhage
0/20
HP: 0011805
Abnormal skeletal muscle morphology
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0032076
Abnormal male urethral meatus morphology
0/20
HP: 0032192
Hydatidiform mole
0/20
HP: 0100627
Displacement of the urethral meatus
0/20