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ICD-10
HPO
Compare GWAS
Super Class
Dysplasia of cervix uteri
Sub Class
Moderate cervical dysplasia
N87.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
549
459656
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr5:64447660
rs6879867
ADAMTS6
G>A
37
12001
33.89
5.824e-09
2.557
chr18:2473897
rs4797983
-
T>G
50
18583
33.56
6.912e-09
2.262
chr15:48426484
rs1426654
SLC24A5
A>G
67
27459
33.46
7.291e-09
2.04
chr3:69225588
rs11128118
FRMD4B
G>T
59
23195
33.33
7.765e-09
2.125
chr8:113186847
rs10283258
-
G>A
66
27288
32.18
1.408e-08
2.023
chr18:50641370
rs113788116
DCC
G>A
48
17907
31.04
2.526e-08
2.226
chr12:54949054
rs1826729
PDE1B
T>G
207
117800
29.81
4.771e-08
1.514
chr10:72792456
rs74147909
-
T>C
36
12285
29.1
6.877e-08
2.423
chr12:21224690
rs6487207
SLCO1B3-SLCO1B7
T>G
130
67106
28.86
7.787e-08
1.639
chr12:3021569
rs59575256
TULP3
G>A
45
16975
28.44
9.673e-08
2.205
chr12:21144438
rs7314046
SLCO1B3-SLCO1B7
A>G
124
63853
28.07
1.17e-07
1.645
chr3:69230061
rs9831516
FRMD4B
A>G
47
18110
27.89
1.281e-07
2.155
chr12:21154087
rs73245826
SLCO1B3-SLCO1B7
G>A
119
61315
27.01
2.027e-07
1.644
chr7:83132441
rs73174584
SEMA3E
T>C
53
21735
26.25
2.993e-07
2.026
chr2:102408327
rs10191330
MAP4K4
C>T
41
15354
26.22
3.039e-07
2.212
chr16:6214224
rs17139486
RBFOX1
A>G
46
17957
26.21
3.057e-07
2.123
chr2:215032142
rs115454193
SPAG16
G>A
37
13381
25.94
3.519e-07
2.288
chr15:48392165
rs1834640
-
A>G
70
31554
25.74
3.909e-07
1.851
chr5:142415989
rs11956057
ARHGAP26
C>T
65
29035
24.87
6.134e-07
1.871
chr16:20293127
rs4550460
-
T>C
85
41190
24.4
7.816e-07
1.732
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
1/20
HP: 0000118
Phenotypic abnormality
2/20
HP: 0000130
Abnormality of the uterus
2/20
HP: 0002664
Neoplasm
1/20
HP: 0007379
Neoplasm of the genitourinary tract
1/20
HP: 0010787
Genital neoplasm
3/20
HP: 0011793
Neoplasm by anatomical site
1/20
HP: 0012888
Abnormality of the uterine cervix
2/20
HP: 0030160
Cervicitis
2/20
HP: 0031521
Vaginal clear cell adenocarcinoma
4/20
HP: 0032131
Cervical dysplasia
2/20
ID
Name
Top Correlation
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000142
Abnormal vagina morphology
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0030416
Vulvar neoplasm
0/20
HP: 0032202
Vulvar intraepithelial neoplasia
0/20
HP: 0032241
Cervical neoplasm
0/20
HP: 0032242
Cervical intraepithelial neoplasia
0/20
HP: 0100650
Vaginal neoplasm
0/20