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ICD-10
HPO
Compare GWAS
Super Class
Perineal laceration during delivery
Sub Class
Second degree perineal laceration during delivery
O70.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
3697
456508
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr5:33951693
rs16891982
SLC45A2
G>C
710
66351
49.12
2.407e-12
1.318
chr15:48426484
rs1426654
SLC24A5
A>G
327
27199
46.21
1.063e-11
1.468
chr18:4157690
rs6506185
DLGAP1
T>C
171
12539
42.97
5.549e-11
1.657
chr5:64447660
rs6879867
ADAMTS6
G>A
162
11876
40.93
1.58e-10
1.658
chr5:33958959
rs28777
SLC45A2
A>C
600
56395
39.15
3.925e-10
1.305
chr12:101761561
rs2305858
UTP20
G>A
422
37760
38.76
4.783e-10
1.366
chr12:101754703
rs10219562
UTP20
T>C
423
37964
37.91
7.395e-10
1.361
chr1:1220954
rs12751100
SCNN1D
G>A
567
53218
37.61
8.633e-10
1.307
chr4:110940045
rs4698804
-
T>C
224
18040
37.08
1.135e-09
1.51
chr10:108672251
rs1572457
SORCS1
C>T
155
11563
36.25
1.735e-09
1.627
chr7:1773996
rs111279332
ELFN1
C>T
189
14829
35.52
2.53e-09
1.55
chr3:69230061
rs9831516
FRMD4B
A>G
220
17937
34.19
4.987e-09
1.491
chr13:72463541
rs1460465
-
A>G
199
15925
34.1
5.247e-09
1.52
chr3:70997086
rs13318034
-
A>G
282
24091
34.02
5.453e-09
1.424
chr4:29774684
rs16882256
-
C>T
179
14051
33.44
7.342e-09
1.547
chr8:110442726
rs11987659
PKHD1L1
G>A
221
18122
33.43
7.403e-09
1.483
chr10:79785825
rs3758464
POLR3A
T>G
148
11151
33.32
7.837e-09
1.612
chr10:5790616
rs2797492
TASOR2
A>G
150
11392
32.5
1.191e-08
1.598
chr15:101692828
rs7168504
-
T>C
401
36552
32.29
1.328e-08
1.339
chr5:13905986
rs72634797
DNAH5
A>G
187
14951
32.26
1.348e-08
1.522
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
3/20
HP: 0000078
Abnormality of the genital system
1/20
HP: 0000080
Abnormality of reproductive system physiology
2/20
HP: 0000118
Phenotypic abnormality
2/20
HP: 0000142
Abnormal vagina morphology
2/20
HP: 0000143
Rectovaginal fistula
11/20
HP: 0001197
Abnormality of prenatal development or birth
2/20
HP: 0001787
Abnormal delivery
4/20
HP: 0002034
Abnormality of the rectum
3/20
HP: 0002242
Abnormal intestine morphology
3/20
HP: 0002250
Abnormal large intestine morphology
3/20
HP: 0004320
Vaginal fistula
8/20
HP: 0010460
Abnormality of the female genitalia
1/20
HP: 0011024
Abnormality of the gastrointestinal tract
1/20
HP: 0011412
Ventouse delivery
5/20
HP: 0011413
Shoulder dystocia
5/20
HP: 0011890
Prolonged bleeding following procedure
5/20
HP: 0011891
Post-partum hemorrhage
5/20
HP: 0012243
Abnormal reproductive system morphology
1/20
HP: 0012498
Nuchal cord
6/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
1/20
HP: 0012732
Anorectal anomaly
3/20
HP: 0025116
Fetal distress
5/20
HP: 0030012
Abnormal female reproductive system physiology
4/20
HP: 0030014
Female sexual dysfunction
6/20
HP: 0030016
Dyspareunia
7/20
HP: 0100590
Rectal fistula
1/20
ID
Name
Top Correlation
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0001892
Abnormal bleeding
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0100589
Urogenital fistula
0/20
HP: 0100819
Intestinal fistula
0/20