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ICD-10
HPO
Compare GWAS
Super Class
Single spontaneous delivery
Sub Class
Spontaneous vertex delivery
O80.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1740
458465
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr1:159174683
rs2814778
ACKR1
T>C
248
19129
363.7
4.414e-81
3.278
chr8:145639681
rs1871534
SLC39A4
G>C
227
17918
319.9
1.558e-71
3.2
chr17:58508582
rs8071181
C17orf64
G>A
200
15217
299.5
4.241e-67
3.293
chr1:173579034
rs12065033
AL139142.2
C>T
197
15144
289.7
5.705e-65
3.26
chr16:29790864
rs235636
ZG16
A>G
174
12647
283.4
1.374e-63
3.434
chr19:42393286
rs717225
ARHGEF1
A>G
242
21701
262.5
4.866e-59
2.811
chr15:48426484
rs1426654
SLC24A5
A>G
281
27245
258.7
3.269e-58
2.618
chr19:42392441
rs16975619
ARHGEF1
T>C
226
19784
256.3
1.115e-57
2.866
chr3:188327555
rs7645635
LPP
T>C
181
14195
255.7
1.488e-57
3.184
chr6:136480972
rs9483910
PDE7B
C>T
235
21137
253.7
3.964e-57
2.803
chr9:140957557
rs11137360
CACNA1B
A>G
232
20774
252.4
7.65e-57
2.812
chr11:67220175
rs1638560
GPR152
A>G
153
11079
250.3
2.199e-56
3.433
chr12:56722060
rs1918496
PAN2
G>T
156
11461
249.1
4.07e-56
3.389
chr15:48392165
rs1834640
-
A>G
306
31318
247.4
9.631e-56
2.48
chr11:67218909
rs949252
GPR152
A>G
147
10629
241.1
2.239e-54
3.435
chr15:28361764
rs4778247
HERC2
T>C
200
17027
240.6
2.866e-54
2.941
chr4:110940045
rs4698804
-
T>C
208
18056
240.5
2.987e-54
2.887
chr10:114925758
rs1056877
TCF7L2
T>C
161
12290
239.2
5.921e-54
3.261
chr5:33951693
rs16891982
SLC45A2
G>C
522
66539
236.5
2.25e-53
2.033
chr9:117110112
Affx-52344420
AKNA
T>TG
177
14402
233.4
1.108e-52
3.07
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
8/20
HP: 0000078
Abnormality of the genital system
4/20
HP: 0000118
Phenotypic abnormality
2/20
HP: 0000119
Abnormality of the genitourinary system
5/20
HP: 0000130
Abnormality of the uterus
13/20
HP: 0000707
Abnormality of the nervous system
1/20
HP: 0000812
Abnormal internal genitalia
7/20
HP: 0000924
Abnormality of the skeletal system
2/20
HP: 0000952
Jaundice
4/20
HP: 0001194
Abnormalities of placenta or umbilical cord
16/20
HP: 0001197
Abnormality of prenatal development or birth
12/20
HP: 0001396
Cholestasis
3/20
HP: 0001622
Premature birth
11/20
HP: 0001623
Breech presentation
14/20
HP: 0001626
Abnormality of the cardiovascular system
1/20
HP: 0001627
Abnormal heart morphology
2/20
HP: 0001787
Abnormal delivery
10/20
HP: 0001871
Abnormality of blood and blood-forming tissues
2/20
HP: 0001892
Abnormal bleeding
4/20
HP: 0001939
Abnormality of metabolism/homeostasis
5/20
HP: 0002011
Morphological central nervous system abnormality
2/20
HP: 0002363
Abnormality of brainstem morphology
16/20
HP: 0002365
Hypoplasia of the brainstem
20/20
HP: 0002597
Abnormality of the vasculature
1/20
HP: 0002937
Hemivertebrae
17/20
HP: 0002977
Aplasia/Hypoplasia involving the central nervous system
5/20
HP: 0003011
Abnormality of the musculature
1/20
HP: 0003155
Elevated alkaline phosphatase
12/20
HP: 0003422
Vertebral segmentation defect
7/20
HP: 0003552
Muscle stiffness
19/20
HP: 0004364
Abnormal circulating nitrogen compound concentration
4/20
HP: 0004379
Abnormality of alkaline phosphatase activity
13/20
HP: 0006579
Prolonged neonatal jaundice
6/20
HP: 0007066
Proximal limb muscle stiffness
20/20
HP: 0007362
Aplasia/Hypoplasia of the brainstem
20/20
HP: 0010460
Abnormality of the female genitalia
5/20
HP: 0010682
Elevated placental alkaline phosphatase
20/20
HP: 0010859
Frank breech presentation
18/20
HP: 0010881
Abnormality of the umbilical cord
13/20
HP: 0011025
Abnormal cardiovascular system physiology
1/20
HP: 0011028
Abnormality of blood circulation
2/20
HP: 0011029
Internal hemorrhage
2/20
HP: 0011121
Abnormality of skin morphology
2/20
HP: 0011354
Generalized abnormality of skin
1/20
HP: 0011410
Caesarian section
7/20
HP: 0011411
Forceps delivery
12/20
HP: 0011412
Ventouse delivery
10/20
HP: 0011413
Shoulder dystocia
11/20
HP: 0011534
Abnormal spatial orientation of the cardiac segments
4/20
HP: 0011540
Congenitally corrected transposition of the great arteries
5/20
HP: 0011603
Congenital malformation of the great arteries
3/20
HP: 0011804
Abnormal muscle physiology
3/20
HP: 0011805
Abnormal skeletal muscle morphology
2/20
HP: 0011842
Abnormality of skeletal morphology
2/20
HP: 0012243
Abnormal reproductive system morphology
5/20
HP: 0012379
Abnormal enzyme/coenzyme activity
8/20
HP: 0012443
Abnormality of brain morphology
2/20
HP: 0012639
Abnormal nervous system morphology
1/20
HP: 0025015
Abnormal vascular morphology
7/20
HP: 0025328
Antepartum hemorrhage
11/20
HP: 0030369
Induced vaginal delivery
17/20
HP: 0030655
Umbilical cord knot
14/20
HP: 0030917
Low APGAR score
11/20
HP: 0030918
Low 1-minute APGAR score
13/20
HP: 0030932
1-minute APGAR score of 5
20/20
HP: 0030962
Abnormal morphology of the great vessels
1/20
HP: 0031105
Abnormal uterus morphology
11/20
HP: 0032180
Abnormal circulating metabolite concentration
3/20
HP: 0040064
Abnormality of limbs
2/20
HP: 0100718
Uterine rupture
13/20
ID
Name
Top Correlation
HP: 0000925
Abnormality of the vertebral column
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001005
Dermatological manifestations of systemic disorders
0/20
HP: 0001392
Abnormality of the liver
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0003312
Abnormal form of the vertebral bodies
0/20
HP: 0003468
Abnormal vertebral morphology
0/20
HP: 0004297
Abnormality of the biliary system
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0009127
Abnormality of the musculature of the limbs
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0030680
Abnormality of cardiovascular system morphology
0/20