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ICD-10
HPO
Compare GWAS
Super Class
Renal agenesis and other reduction defects of kidney
Sub Class
Renal agenesis, unilateral
Q60.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
131
460074
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr11:98653719
rs12793263
-
G>T
16
14699
32.91
9.654e-09
3.928
chr20:57069932
rs118139953
APCDD1L
G>A
22
25350
30.05
4.21e-08
3.167
chr13:108901818
rs116953323
-
G>A
25
31587
28.73
8.331e-08
2.92
chr13:75912945
rs9543904
TBC1D4
C>T
20
22500
28.23
1.078e-07
3.208
chr15:62453736
rs72752018
-
C>T
12
10450
26.61
2.486e-07
4.073
chr5:119847275
rs17146713
PRR16
C>T
18
20026
25.93
3.536e-07
3.23
chr17:76969183
rs55684276
LGALS3BP
G>A
17
18525
25.43
4.599e-07
3.288
chr3:141539010
rs115717823
-
C>T
17
18577
24.86
6.165e-07
3.249
chr15:41798485
rs34356833
LTK
C>T
13
12514
24.59
7.105e-07
3.716
chr1:161463936
rs115944227
-
A>G
32
48400
23.92
1.006e-06
2.432
chr18:57099665
rs17769805
CCBE1
C>G
29
42552
23.21
1.451e-06
2.491
chr9:81856494
rs72748423
-
A>G
37
60381
22.83
1.77e-06
2.269
chr18:57125871
rs117980273
CCBE1
T>G
20
25194
22.42
2.19e-06
2.857
chr11:9551310
rs61876800
-
G>A
17
19743
22.42
2.192e-06
3.079
chr7:14860311
rs78507868
DGKB
T>C
24
33154
22.36
2.263e-06
2.64
chr4:152215052
rs115188497
SH3D19
A>G
11
10349
21.36
3.807e-06
3.756
chr6:39027106
rs59902637
GLP1R
C>T
42
74286
21.17
4.212e-06
2.121
chr12:131529005
rs118187959
ADGRD1
C>T
12
11963
21.07
4.424e-06
3.554
chr4:26023757
rs115286901
-
C>G
19
24084
20.97
4.665e-06
2.83
chr9:27865212
rs17780713
-
A>G
12
12003
20.9
4.831e-06
3.538
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000003
Multicystic kidney dysplasia
1/20
HP: 0000122
Unilateral renal agenesis
1/20
HP: 0001032
Absent distal interphalangeal creases
2/20
HP: 0004712
Renal malrotation
10/20
HP: 0004736
Crossed fused renal ectopia
2/20
HP: 0006109
Absent phalangeal crease
2/20
HP: 0006143
Abnormal finger flexion creases
2/20
HP: 0010958
Bilateral renal agenesis
1/20
HP: 0011546
Abnormal atrioventricular connection
1/20
HP: 0011553
Discordant atrioventricular connection
8/20
HP: 0030676
Satyr ear
15/20
HP: 0032417
Periglomerular fibrosis
7/20
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
0/20
HP: 0000069
Abnormality of the ureter
0/20
HP: 0000073
Ureteral duplication
0/20
HP: 0000077
Abnormality of the kidney
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000086
Ectopic kidney
0/20
HP: 0000095
Abnormality of renal glomerulus morphology
0/20
HP: 0000104
Renal agenesis
0/20
HP: 0000107
Renal cyst
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000142
Abnormal vagina morphology
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000356
Abnormality of the outer ear
0/20
HP: 0000377
Abnormality of the pinna
0/20
HP: 0000598
Abnormality of the ear
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0001155
Abnormality of the hand
0/20
HP: 0001167
Abnormality of finger
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001627
Abnormal heart morphology
0/20
HP: 0002813
Abnormality of limb bone morphology
0/20
HP: 0002817
Abnormality of the upper limb
0/20
HP: 0008678
Renal hypoplasia/aplasia
0/20
HP: 0008705
Ureteral triplication
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0010935
Abnormality of the upper urinary tract
0/20
HP: 0011035
Abnormal renal cortex morphology
0/20
HP: 0011297
Abnormal digit morphology
0/20
HP: 0011545
Abnormal connection of the cardiac segments
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0011844
Abnormal appendicular skeleton morphology
0/20
HP: 0012210
Abnormal renal morphology
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0012575
Abnormal nephron morphology
0/20
HP: 0025633
Abnormal ureter morphology
0/20
HP: 0030680
Abnormality of cardiovascular system morphology
0/20
HP: 0031263
Abnormal renal corpuscle morphology
0/20
HP: 0031703
Abnormal ear morphology
0/20
HP: 0040064
Abnormality of limbs
0/20
HP: 0040068
Abnormality of limb bone
0/20
HP: 0040314
Blind vagina
0/20
HP: 0100542
Abnormal localization of kidney
0/20