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ICD-10
HPO
Compare GWAS
Super Class
Abdominal and pelvic pain
Sub Class
Pain localised to upper abdomen
R10.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
11742
448463
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr2:44073656
rs41360247
ABCG8
T>C
1877
60085
54.02
1.99e-13
1.196
chr2:44066247
Affx-20090007
ABCG8
G>C
1907
61387
50.8
1.023e-12
1.188
chr2:44065090
Affx-20089987
ABCG5
G>A
1835
59258
46.97
7.206e-12
1.184
chr11:11243840
rs78799917
-
C>A
1168
38097
25.66
4.066e-07
1.166
chr6:164034223
rs6928128
-
G>A
8008
317184
25.48
4.46e-07
0.933
chr3:118780595
rs7652576
IGSF11
A>G
3294
114671
25.0
5.727e-07
1.099
chr19:40427903
rs7252127
FCGBP
C>A
8311
300325
24.1
9.139e-07
1.069
chr3:109763550
rs77937538
-
T>G
426
20414
24.07
9.27e-07
0.7853
chr8:68074137
rs16933182
CSPP1
G>A
1055
34339
23.74
1.104e-06
1.168
chr3:109536685
rs74549395
-
A>G
423
20176
23.1
1.536e-06
0.7885
chr7:36891841
rs13234380
-
A>G
9465
371891
22.65
1.943e-06
0.9392
chr8:67680194
rs6472285
C8orf44-SGK3
A>G
1223
40399
22.61
1.981e-06
1.152
chr14:53663930
rs2022763
-
G>T
4329
153025
22.49
2.117e-06
1.084
chr13:92265012
rs74241693
GPC5
T>G
444
13399
22.31
2.322e-06
1.258
chr3:118621664
rs36052974
IGSF11
C>A
4286
151682
21.92
2.844e-06
1.083
chr17:9586811
rs73975789
USP43
A>G
439
13221
21.77
3.075e-06
1.256
chr8:68124170
rs6991974
ARFGEF1
G>A
1066
34948
21.62
3.327e-06
1.159
chr8:30861607
rs11776713
PURG
T>C
11315
441892
21.33
3.86e-06
0.9423
chr13:37841344
rs1324052
-
G>A
2674
92687
21.31
3.913e-06
1.1
chr5:33951693
rs16891982
SLC45A2
G>C
1911
65150
21.28
3.962e-06
1.118
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000952
Jaundice
1/20
HP: 0001005
Dermatological manifestations of systemic disorders
3/20
HP: 0001046
Intermittent jaundice
4/20
HP: 0001197
Abnormality of prenatal development or birth
1/20
HP: 0001392
Abnormality of the liver
3/20
HP: 0001396
Cholestasis
3/20
HP: 0001787
Abnormal delivery
1/20
HP: 0002012
Abnormality of the abdominal organs
1/20
HP: 0002013
Vomiting
1/20
HP: 0002017
Nausea and vomiting
1/20
HP: 0002715
Abnormality of the immune system
2/20
HP: 0004297
Abnormality of the biliary system
2/20
HP: 0010977
Abnormal phagocytosis
19/20
HP: 0010978
Abnormality of immune system physiology
1/20
HP: 0011121
Abnormality of skin morphology
1/20
HP: 0011410
Caesarian section
1/20
HP: 0012531
Pain
3/20
HP: 0025089
Feculent vomiting
6/20
HP: 0025142
Constitutional symptom
1/20
HP: 0025323
Abnormal arterial physiology
1/20
HP: 0030363
Primary Caesarian section
7/20
HP: 0032552
Abnormal pulse
4/20
HP: 0032555
Bounding pulse
4/20
HP: 0410337
Parasite allergy
14/20
ID
Name
Top Correlation
HP: 0000951
Abnormality of the skin
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0002027
Abdominal pain
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0011354
Generalized abnormality of skin
0/20
HP: 0011458
Abdominal symptom
0/20
HP: 0012393
Allergy
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025032
Abnormality of digestive system physiology
0/20
HP: 0030163
Abnormal vascular physiology
0/20
HP: 0100326
Immunologic hypersensitivity
0/20
HP: 0410281
Dyspepsia
0/20