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ICD-10
HPO
Compare GWAS
Super Class
Abdominal and pelvic pain
Sub Class
Pelvic and perineal pain
R10.2
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1500
458705
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr2:171380643
rs34020565
MYO3B
T>G
150
24709
53.35
2.791e-13
1.828
chr6:3290819
rs4587211
PSMG4
T>C
113
17126
52.75
3.782e-13
1.982
chr5:54280007
rs1508890
ESM1
C>A
118
18298
51.06
8.96e-13
1.935
chr15:48426484
rs1426654
SLC24A5
A>G
160
27366
49.9
1.615e-12
1.762
chr11:67220175
rs1638560
GPR152
A>G
81
11151
49.54
1.944e-12
2.171
chr4:190837589
rs6822336
-
C>T
80
11066
48.35
3.573e-12
2.161
chr11:67218909
rs949252
GPR152
A>G
78
10698
48.22
3.805e-12
2.179
chr12:129457260
rs470395
GLT1D1
A>G
85
12034
48.17
3.904e-12
2.112
chr17:9167973
rs76799606
STX8
C>T
123
19987
45.72
1.363e-11
1.847
chr4:84374692
rs17006837
HELQ
A>G
72
9805
45.38
1.623e-11
2.193
chr15:92422340
rs12594215
SLCO3A1
G>A
90
13298
45.06
1.907e-11
2.024
chr18:26704780
rs9949674
-
A>G
80
11360
44.94
2.037e-11
2.105
chr1:158944584
rs1615480
PYHIN1
T>C
161
28514
43.9
3.462e-11
1.7
chr5:92717273
rs6875617
-
C>T
101
15695
43.44
4.363e-11
1.928
chr6:137344363
rs1744080
IL20RA
G>A
105
16506
43.35
4.572e-11
1.904
chr5:82710733
rs10037203
-
C>T
112
18015
43.16
5.032e-11
1.865
chr12:56755058
rs4301822
APOF
A>G
85
12527
43.15
5.079e-11
2.033
chr12:56722060
rs1918496
PAN2
G>T
80
11537
42.91
5.741e-11
2.07
chr9:127267689
rs3814134
NR5A1
A>G
162
29044
41.97
9.256e-11
1.678
chr16:9229056
rs9925564
-
A>G
135
23120
41.91
9.536e-11
1.756
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000022
Abnormality of male internal genitalia
1/20
HP: 0000078
Abnormality of the genital system
1/20
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000119
Abnormality of the genitourinary system
2/20
HP: 0000707
Abnormality of the nervous system
1/20
HP: 0000812
Abnormal internal genitalia
2/20
HP: 0002011
Morphological central nervous system abnormality
1/20
HP: 0002715
Abnormality of the immune system
1/20
HP: 0008775
Abnormal prostate morphology
1/20
HP: 0010461
Abnormality of the male genitalia
1/20
HP: 0010978
Abnormality of immune system physiology
1/20
HP: 0012243
Abnormal reproductive system morphology
2/20
HP: 0012531
Pain
1/20
HP: 0012639
Abnormal nervous system morphology
1/20
HP: 0012647
Abnormal inflammatory response
1/20
HP: 0012649
Increased inflammatory response
1/20
HP: 0012702
Tenesmus
1/20
HP: 0025032
Abnormality of digestive system physiology
1/20
HP: 0025142
Constitutional symptom
1/20
HP: 0025643
Tarlov cyst
2/20
HP: 0030014
Female sexual dysfunction
4/20
HP: 0030016
Dyspareunia
3/20
HP: 0030017
Vaginismus
5/20
HP: 0032148
Episodic pain
4/20
HP: 0032149
Breakthrough pain
8/20
HP: 0032171
Bladder pain
1/20
HP: 0500005
Anal pain
2/20
ID
Name
Top Correlation
HP: 0000024
Prostatitis
0/20
HP: 0000080
Abnormality of reproductive system physiology
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0012700
Abnormal large intestine physiology
0/20
HP: 0012701
Bowel urgency
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0030012
Abnormal female reproductive system physiology
0/20
HP: 0030724
Central nervous system cyst
0/20
HP: 0030943
Vulvodynia
0/20