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ICD-10
HPO
Compare GWAS
Super Class
Symptoms and signs involving the urinary system
Sub Class
Retention of urine
R33
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
10031
450175
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr15:48426484
rs1426654
SLC24A5
A>G
410
27116
58.84
1.713e-14
0.6817
chr15:48392165
rs1834640
-
A>G
497
31127
52.09
5.297e-13
0.7198
chr10:45243171
rs10900107
-
T>C
374
24372
49.63
1.856e-12
0.6919
chr19:1251408
rs58898131
MIDN
G>T
304
20566
48.7
2.985e-12
0.668
chr5:33951693
rs16891982
SLC45A2
G>C
1190
65871
48.3
3.666e-12
0.8114
chr19:42393286
rs717225
ARHGEF1
A>G
326
21617
47.07
6.866e-12
0.6815
chr6:170242949
rs9396958
-
T>C
221
15893
46.92
7.39e-12
0.6298
chr19:42392441
rs16975619
ARHGEF1
T>C
294
19716
44.82
2.158e-11
0.6746
chr5:33958959
rs28777
SLC45A2
A>C
1003
55992
43.78
3.665e-11
0.806
chr6:22050187
rs1736507
-
C>A
197
14316
43.68
3.858e-11
0.6237
chr1:169519112
rs6020
F5
C>T
253
17379
43.67
3.891e-11
0.6584
chr10:127291027
rs927957
TEX36
C>T
375
23931
43.56
4.111e-11
0.7083
chr9:135352751
rs11243789
CFAP77
G>A
216
15279
42.69
6.424e-11
0.64
chr19:42391425
rs28521795
ARHGEF1
G>A
278
18544
41.25
1.343e-10
0.6782
chr9:127267689
rs3814134
NR5A1
A>G
476
28730
38.66
5.039e-10
0.7485
chr6:16771949
rs1633767
-
C>T
152
11272
36.95
1.214e-09
0.6107
chr2:108397346
rs3098623
-
C>T
1117
60739
36.76
1.334e-09
0.8287
chr19:42392310
rs2288509
ARHGEF1
C>T
262
17282
36.4
1.606e-09
0.6867
chr5:177964645
rs10479497
COL23A1
C>T
153
11225
35.9
2.082e-09
0.6159
chr3:123453061
rs3796164
MYLK
A>G
413
25166
35.75
2.248e-09
0.7419
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
1/20
HP: 0000009
Functional abnormality of the bladder
8/20
HP: 0000014
Abnormality of the bladder
8/20
HP: 0000020
Urinary incontinence
9/20
HP: 0000022
Abnormality of male internal genitalia
2/20
HP: 0000118
Phenotypic abnormality
4/20
HP: 0008711
Benign prostatic hyperplasia
1/20
HP: 0008775
Abnormal prostate morphology
3/20
HP: 0010461
Abnormality of the male genitalia
6/20
HP: 0010936
Abnormality of the lower urinary tract
7/20
HP: 0010992
Stress urinary incontinence
9/20
HP: 0025142
Constitutional symptom
4/20
HP: 0030011
Imperforate hymen
16/20
HP: 0031923
Hematocolpos
14/20
HP: 0041047
Bladder outlet obstruction
4/20
ID
Name
Top Correlation
HP: 0000016
Urinary retention
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000142
Abnormal vagina morphology
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0011277
Abnormality of the urinary system physiology
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0031058
Impairment of activities of daily living
0/20
HP: 0031064
Impaired continence
0/20