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ICD-10
HPO
Compare GWAS
Super Class
Symptoms and signs involving the urinary system
Sub Class
Retention of urine
R33
Female
ⓘ
Male
ⓘ
Links
Ignore Sex
Interactive Plot
Statistics
Female Case
Female Control
% Female
2482
247382
25%
Male Case
Male Control
% Male
7549
202793
75%
Top SNP Information
Show Female
Show Male
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr4:146377064
rs77402919
-
C>T
125
8148
24.04
9.429e-07
1.559
chr15:98478810
rs7171497
-
A>G
897
104728
23.34
1.357e-06
0.837
chr11:14926755
rs12418214
CALCB
T>C
421
52806
21.7
3.185e-06
0.7888
chr16:25837102
rs34341032
HS3ST4
A>G
261
20020
20.76
5.211e-06
1.337
chr17:2126504
rs216172
SMG6
G>C
1967
183367
19.81
8.537e-06
1.137
chr9:29604713
rs112922919
-
T>C
281
21907
19.54
9.86e-06
1.313
chr17:2117945
rs2281727
SMG6
A>G
1986
185424
19.16
1.201e-05
1.134
chr6:132965886
rs118044632
-
C>T
119
8080
19.07
1.259e-05
1.5
chr2:8680240
rs7560283
-
A>C
1204
135612
19.02
1.296e-05
0.8659
chr9:23127562
rs4977826
-
C>T
351
44278
18.66
1.563e-05
0.7872
chr11:74284291
rs77401319
POLD3
A>G
183
13510
18.54
1.666e-05
1.384
chr3:114982170
rs62264867
-
T>C
140
9877
18.49
1.706e-05
1.446
chr20:60081842
rs2427143
CDH4
G>A
159
11463
18.49
1.707e-05
1.415
chr13:111269918
rs72661634
NAXD
G>A
129
8952
18.44
1.755e-05
1.467
chr4:190536712
rs13137914
-
A>G
2308
248776
18.31
1.882e-05
0.8868
chr15:94899887
rs80116939
MCTP2
G>A
104
6946
18.28
1.91e-05
1.527
chr2:173769917
rs116300369
RAPGEF4
G>A
187
13895
18.27
1.914e-05
1.376
chr6:152306346
rs9371236
ESR1
A>G
96
14894
18.24
1.943e-05
0.6453
chr12:52146900
rs118050982
SCN8A
G>A
110
7422
18.18
2.01e-05
1.508
chr21:29173889
rs117751661
-
G>A
197
14742
18.18
2.01e-05
1.364
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr10:123033549
rs10788160
-
G>A
4195
104840
41.42
1.227e-10
1.125
chr10:123032519
rs11199874
-
G>A
4254
106706
38.25
6.237e-10
1.12
chr5:33951693
rs16891982
SLC45A2
G>C
905
29946
35.37
2.723e-09
0.8135
chr19:1251408
rs58898131
MIDN
G>T
220
8920
34.84
3.575e-09
0.6683
chr5:33958959
rs28777
SLC45A2
A>C
758
25394
33.16
8.472e-09
0.8048
chr1:169519112
rs6020
F5
C>T
178
7422
32.36
1.282e-08
0.6501
chr10:45243171
rs10900107
-
T>C
275
10521
32.02
1.528e-08
0.7068
chr13:51111355
rs3116602
DLEU7
T>G
3554
88932
31.65
1.844e-08
1.115
chr13:51116901
rs3118914
DLEU7
G>T
3527
88412
30.98
2.613e-08
1.114
chr15:48426484
rs1426654
SLC24A5
A>G
299
11183
30.09
4.12e-08
0.7238
chr10:123025225
rs7915008
-
G>A
4101
103836
29.59
5.34e-08
1.106
chr13:51170755
rs3095527
DLEU7
A>G
3217
80256
29.49
5.61e-08
1.116
chr15:48392165
rs1834640
-
A>G
362
13105
29.36
6.007e-08
0.7475
chr2:46735423
rs17817004
ATP6V1E2
C>T
5974
154048
29.34
6.061e-08
1.095
chr10:123021731
rs7076500
-
G>A
6114
157807
28.8
8.007e-08
1.094
chr5:96797190
rs10866781
-
A>G
7761
202319
28.79
8.056e-08
1.091
chr9:20418172
rs12685798
MLLT3
G>C
766
25295
28.78
8.089e-08
0.8176
chr10:108672251
rs1572457
SORCS1
C>T
105
4817
28.77
8.141e-08
0.5916
chr5:177964645
rs10479497
COL23A1
C>T
107
4866
28.55
9.127e-08
0.5956
chr17:5865515
rs723656
AC007846.2
G>A
478
16534
27.45
1.611e-07
0.7817
Associated Phenotypes
ⓘ
Shared SNP phenotype
No shared SNP phenotype
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
1/20
HP: 0000009
Functional abnormality of the bladder
8/20
HP: 0000014
Abnormality of the bladder
8/20
HP: 0000020
Urinary incontinence
9/20
HP: 0000022
Abnormality of male internal genitalia
2/20
HP: 0000118
Phenotypic abnormality
4/20
HP: 0008711
Benign prostatic hyperplasia
1/20
HP: 0008775
Abnormal prostate morphology
3/20
HP: 0010461
Abnormality of the male genitalia
6/20
HP: 0010936
Abnormality of the lower urinary tract
7/20
HP: 0010992
Stress urinary incontinence
9/20
HP: 0025142
Constitutional symptom
4/20
HP: 0030011
Imperforate hymen
16/20
HP: 0031923
Hematocolpos
14/20
HP: 0041047
Bladder outlet obstruction
4/20
ID
Name
Top Correlation
HP: 0000016
Urinary retention
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000142
Abnormal vagina morphology
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0011277
Abnormality of the urinary system physiology
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0031058
Impairment of activities of daily living
0/20
HP: 0031064
Impaired continence
0/20